Class gathering all information required to run denzo.
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Methods
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Run
SetupFile
Task
__init__
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Run
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Run (
self,
commands,
logfile,
cmdfile='denzo.cmd',
idlefunc=None,
)
Run denzo and wait for completion.
parameters:
- commands
denzo commands to execute.
- logfile
the log file where denzo should write its results.
- cmdfile
the file that should be created for the denzo commands.
- idlefunc
a function that should be called regularly while
waiting for the denzo completion. This could e.g.
update the GUI windows.
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Exceptions
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KeyboardInterrupt( "during denzo run" )
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SetupFile
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SetupFile (
self,
commands=None,
logfile=None,
cmdfile='denzo.cmd',
exitdenzo=0,
)
Make the denzo command file.
parameters:
- commands
denzo commands to execute.
- logfile
the log file where denzo should write its results.
- cmdfile
the file that should be created for the denzo commands.
- exitdenzo
if 1, denzo input will be nicely ; terminated.
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Task
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Task (
self,
commands,
logfile,
cmdfile='denzo.cmd',
scrnfile=None,
)
Start denzo.
parameters:
- commands
denzo commands to execute.
- logfile
the log file where denzo should write its results.
- cmdfile
the file that should be created for the denzo commands.
- scrnfile
the name of the file that should contain the denzo
screen output.
Return value: a Task() object that is already running. |
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__init__
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__init__ (
self,
hardware,
experiment,
verbose=1,
header=None,
)
Constructor
parameters:
- hardware
hardware to insert hardware-dependent parameters
- experiment
DenzoExp() instance object
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