KappaCCD
25 November 2008
part of 0540.712
    Technical user manual

 
 
 
 

Introduction
 

The KappaCCD consists of a X-ray source, three axes goniometer (Omega, Kappa, Phi) to position the crystal and a Theta axis and DX to position the detector. The two-dimensional detector measures the X-ray, which is reflected in the crystal.

The X-ray can be generated by a fixed tube as part of the goniometer and a HV generator or by a stand alone rotating anode generator. The X-ray optics consists of a main shutter, a fast shutter, a monochromator to suppress the ß- and brehms radiation and a collimator to get a small bundle. Safety switches close the main shutter or switch off the high voltage in unsafe conditions. In case of a rotating anode the main shutter and some safeties are handled by the generator. A microscope displays the crystal on the PC monitor. In the two-dimensional detector a phosphor converts the X-ray to light, a fibre optic taper reduces the image and a cooled scientific grade CCD measures the light signal.

The axes are decoded by precision optical encoders and are driven by DC motors, which permit accurate, fast and smooth positioning with low power. The system is controlled by a Server computer. A Host computer with data collecting and evaluating software connects to the system. The goniometer is surrounded by a radiation enclosure, which prevents access to the radiation and suppresses scattered X-ray.
 


Safety instructions

Alterations, other than mentioned in this manual, can obstruct the safety precautions and are therefore not recommended. This includes adjustments which are sealed. Parts may only be changed by identical parts.

X-ray safety

The equipment generates open X-ray, which can cause human hazards when safety rules are not followed:

Beryllium

The detector and X-ray tube contain windows of beryllium. In normal use these area's cannot be reached, but during maintenance, care must be taken not to touch the window. When by accident the beryllium is touched, wash with soap and water.

Fumes and dust from beryllium metal can be hazardous if inhaled. During use, corrosion of the beryllium window may occur, but it should not be cut, machined or otherwise removed. Tube and detector disposal must comply with the national and local regulations governing beryllium.
 
 


Specifications

Angle, DX
Phi  ±180°
Kappa ±175°
Omega ±210°
Theta, with sealed tube -10°, +66° (in a 590 radiation enclosure)
Chi 0° - 99.85°
DX 25 - 170 mm
Speed
Phi  0.0012 - 3000 °/min 
Kappa, Omega, 2Theta 0.0009 - 2000 °/min
DX  2000 mm/min
Accuracy
Phi  ±0.015°
Kappa, Omega, 2Theta ±0.010°
Reproducibility ±0.005°
Resolution 0.0003°
DX ±0.5 mm
Reproducibility ±0.1 mm
Sphere of confusion R = 5 µm
--
Load, Phi max. 1 kg
Goniometer ECON head X, Y: ±1.5 mm, Z: 8 mm (For minimum DX: only ECON head and no distance ring)
Microscope 0.7 x 11 mm viewing area, grid approx. 0.05 mm

Anti collision

X-ray optics
X-ray source
Power maximum 60 kV, 300 mA
Crystal - focal point 216.5 mm
Beta filters
Open hole  beta/alpha = 13%
Cu 0.020 mm nickel, beta/alpha = 0.2%
Mo 0.108 mm zirconium, beta/alpha = 0.2%
Fe: 0.016 mm manganese, beta/alpha = 0.2%
-
Monochromator, sealed tube Graphite, 12 x 6 mm, 0 0 2 reflection, mosaic spread approx. 0.4°
Collimators, sealed fine focus 0.25 mm (351), 0.35 mm (352), 0.6 mm (353)
Beamstop 1 mm, 1.5 mm, 2 mm
Screen 63.5 x 63.5 mm
Pixels  621 x 576 (binned)
Pixel size  110 x 110 µm (binned)
Distortion <2 % 
Phosphor 25 mg/cm² Gd2O2S, optimized for Mo. Option optimized for Cu: 10 mg/cm²
Taper, magnification  2.45:1
CCD  EEV, CCD05-30 grade 1, MPP (AIMO), 152 x 1242 (V x H) pixels
Dark current 0.02 e/s.pix
Cooling CCD -60 °C
Cooling liquid typ. 0°C, min -10°C, Ethylene glycol / demineralized water, 50%/50% mixture
Read noise, total  1 Mo photon at 200 kHz readout speed
ADC  16 bit
Read time 1.8 s (200 kHz, binned), 0.9 s (430 kHz, binned)
Pixel binning Default 2x2 in the CCD
Weight 7 kg
Size detector 20 x 15 x 15 cm (l x w x h)
Size Controller 41 x 44 x 19 cm
Size Power unit 35 x 14 x 22 cm
Cable detector - power unit 4.6 m
Cable controller - computer 7.6 m (maximum 46 m)
PC board ISA TAXI interface, DMA transfer

Image defects (which are compensated for in software)

Safety interlocks


The shutter does not open, or is closed when:

The X-ray high voltage is not switched on, or is switched off when: Safety override

The system is supplied with two overrides, which are only allowed to be used during technical maintenance (see safety rules).

Safety with rotating anode FR591

With a X-ray generator all safeties are handled by the generator, except the shutter safeties: collimator and beam stop.

Safety signals

With all lamps, excluded the green shutter-closed lamp, a defect lamp is detected and activates the safety.

Safety with power off

Safety demands that circuits are automatically in a safe position when they are out of order. So during power off, the goniometer Interface and the X-ray high voltage are switched off by the safeties.

Environment Indoor use
Altitude  Up to 2000 m
Temperature, operating 20-22°C (within specification)
Relative humidity Maximum 80% if <31°C, decrease linearly to 50% at 40°C
Pollution degree 2, according to IEC 664 (normal clean environment).
Protection IP 20, according to IEC 529 (limited protection to water).
Gasses No explosive gasses are allowed.
--
Power supply Nominal 100V-120V, 200V-240V. max. 1500 VA single phase (included liquid cooler)
Fluctuations ±10% 
Frequency 47-63Hz. 100V-110V: 57-63Hz.
Installation category II, according to IEC 664.
Goniometer 152 kg
Interface 8.5 kg


Installation

Position

Power Liquid cooler Interface

Electronic interfaces are mounted in the cabinet or placed on the table top. They must not be placed within 50 cm of the X-ray tube, to prevent electrical problems due to spilt cooling water. Ventilation holes must not be covered and no insulating or heavy object must be placed on the equipment.

Safety ground

Position of the Oxford Cryostream

A detector - crystal distance of 25 mm (using an ECON goniometer head) is possible when a modified beamstop is used. Take care the cooling head is not in the way of any goniometer movement.
 
    Positioning the system as shown in the figures. In this position the angle between the vertical axis and the cooling head is about 10 degrees. For DX = 25 mm a modified beamstop must be used.

    Note that the dummy cooling head has a smaller diameter and is therefore not well suited for sorting out the proper position. It is possible to place a cuff around the dummy to make it suitable.

External Phi limit switch for use with the FR559 crystal heating device

Connections and controls

Red status led on the  Power unit: (in the first series the status led can be on another position)
 
Off Cooling off or fault condition.
On Cooling switch on (after approx. 30 s) and cooling liquid at approx. 0°C or lower.
1/4 on, 3/4 off Cooling switch off and CCD above approx. +10°C, ready to switch off the power (or cooling liquid too warm to start cooling).
3/4 on, 1/4 off Cooling switch off and cooling liquid below approx. +10°C: ready to start cooling
or: Cooling switch on and cooling liquid above approx. +10°C: cooling liquid too warm.

Green led on the Power unit: power on of both Controller and power unit. For test of only the power unit: check with the controller powered off.
 


Operation

Start-up procedure Detector cooling on: Shut off procedure

Detector cooling off:

Server software The Host computer contains the programs to define the measurements, collect the images and evaluate the data. It is connected to the Server computer by an ethernet connection. The host computer can be a SGI under UNIX or PC under Linux. During measurement the images are directly transported from the Server computer to the Host computer. The server computer is a dedicated PC for controlling the goniometer and detector. After receiving the measurement parameters from the Host computer it drives the goniometer and the detector. The Server computer runs under DOS and Windows 3. The server program consist of: It is not recommended to install other software, because it can disturb the server program. The set-up parameters are saved in the Server computer in the set-up file C:\CCD\SERVER\KCCD.SET. It is a text editable file, but most items are changed through the Server program. Some parameters:
 
ID_STRING Customer identification
DETECTOR_ID Last digits of the detector serial number
GONIOMETER_ID Last digits of the goniometer serial number
DET_PHOTGAIN Total photon gain in ADU/photon

With a ; (semicolon) placed before GONIOMETER_PRESENT the server program starts up without the goniometer. This can be used to test the detector. The calibration files are saved in C:\CCD\CALIBR
 
GRID.KCD (or .SPE) Image with holes on a 0.032" raster to calculate the image distortion compensation.
NUNF...KCD Images from a Yttrium sample to calculate the non uniform sensitivity. An image without X-ray is made (background) and two images with X-ray at 2Theta = +45° and -45°.

The file C:\CCD\CALIBR\INFOLOG.TXT contains some calibration data, installation data and other log remarks.

Copy the complete upgrade diskette to the C disk. Overwrite existing files. Don't copy read only files.
 


Maintenance

Cleaning

For cleaning use a damp cloth, moistened with water or isopropyl alcohol. No cleaning agent may enter the goniometer.
 


Tools


 


Safety test

  1. Switch off the X-ray high voltage
  2. Open the shutter with Acquisition · Toggle shutter. Check both shutter-open lamps.
  3. Check if the shutter will not open after activating the next unsafe conditions. The shutter must remain closed after reestablishment of the safety (except the shutter lamps):
  4. Check the flashing Open-beam lamp when the radiation enclosure safety is override by the key-switch.
X-ray high voltage safety, with the FR590
  1. Switch on the high voltage to minimum: 20 kV 5 mA
  2. Check the X-ray on lamps.
  3. Check if the high voltage falls off when:
X-ray high voltage safety, with the FR591
  1. Switch on the high voltage on minimum: 20 kV 5 mA.
  2. Check if the high voltage falls off when:
  3. See safety tests in FR591 service manual.

X-ray optics alignment with a sealed tube

The measurement is done in a less safe condition : without beamstop and the enclosure safety override. Safe operation is possible when executed by a qualified person and precautions have been taken (see safety instructions)
  1. Don't let other persons come in the neighbourhood of the system.
  2. Don't leave the system unattended, before reestablishment of the safety.
  3. Don't come in the primary beam, although for security reasons it is attenuated to a weak and safe intensity.
Measurement set-up
  1. Zero all axes (this means Omega is 160°). DX = 150 mm. Always keep Theta = 0°. No beta filter.
  2. Place a #353 collimator.
  3. Place the absorber on the collimator (take care: Mo and Cu use different absorbers).
  4. Remove the beamstop and place the red vane (safety switch override). take care, the primary beam is measured, be sure the second beamstop (X-ray shield) in the radiation enclosure is in place (the PVC windows are not sufficient to stop the primary beam), see X-ray safety instructions.
  5. X-ray generator:
  6. For measurements use in the server : Setup · Calibrate · Beam-alignment.
Adjustment
  1. Adjust Tube 2Theta to 0°.
  2. Dismount the monochromator and mount the X-ray port (two Allen screws {2.5 mm} at the bottom, which can be reached by two holes {not the middle one} under the black monochromator holder). During replacement the power of the X-ray generator must be off.
  3. Adjust tube 2Theta = 0° and take-off = 3.0° (for fine focus 0.4 x 8 mm).
  4. Adjust on approx. maximum intensity with tube vertical (Allen 4.0 mm) and tube horizontal (Allen 3.0 mm) adjustment (measurement Continuous).
  5. Raise the generator mA till the intensity is approx. 10000 ADU.
  6. Mount the half-beam absorber (3 mm bar) on a goniometer head. Align it with the microscope with / (former view 1) and Phi 90° rotated: the edge of the bar must be in the centre (it must absorb half of the beam).
  7. Align horizontal and vertical :
  8. Test the alignment of the half-beam absorber :
  9. Remove the half-beam absorber and X-ray port. Switch off the power of the X-ray generator during replacement.
  10. Mount the monochromator and switch on the power of the X-ray generator.
  11. Adjust Tube 2Theta (Mo: 12.2°, Cu: 26.6°) and the Monochromator Theta on the anode target material used.
  12. Adjust the intensity on maximum. First with monochromator Theta, then tube 2Theta and monochromator height.
  13. Lock the monochromator height.
  14. Measure the open intensity.
  15. Mount the half-beam absorber and position horizontal with "Vertical" (don't use the result of this measurement). Measure continuously and adjust with monochromator theta till the intensity is half the previous measured open intensity ±10% (a first coarse alignment).
  16. As before, adjust the intensity within 5%:
  17. Lock the monochromator Theta.
  18. Set the X-ray generator to 10 mA and measure the open intensity (measurement Open) without the half-beam absorber. This is the Effic value.
Adjustment points

 


EFFIC: intensity of the primary beam

The effic measurement is a relative measurement of the intensity of the primary beam, which measures the total efficiency of the X-ray: tube, optics and detector gain. When the value is too low it is mostly caused by the tube (degradation) or the X-ray alignment. The measurement is done during installation of the system and later measurements can be compared with this value. Take into account that because of tolerance in collimator and absorber (material thickness) the values cannot be accurately compared with other systems.

Measurement:


Revacuum

After some time the vacuum of the detector can become lower, resulting in not reaching the low temperature (minimal after one year, mostly after several years). The quality of the detector or measurements will not be influenced by a lower vacuum. The vacuum can easily be restored with a standard vacuum pump and the tube set delivered with the system:

  1. Shut off the detector.
  2. Connect a vacuum pump to the vacuum connection on top of the detector (an oil filter is not necessary).
  3. Switch on the vacuum pump till it reaches approx. 4 Pa (30 mTorr, 0.04 mbar).
  4. Open the vacuum valve at the side of the detector (two full turns).
  5. Wait till the pressure is at least the above value.
  6. Close the vacuum valve with a torque of 3.5 - 4.0 Nm (approx. 30 Lbf-inches) switch off the vacuum pump.

 


Reset

When the goniometer program halts, it can be reset by the button on the front of the interface. A reset is also possible by switching off the power but this will also switch off the X-ray high voltage.



 

Microscope alignment
 
Fine adjustment of the microscope is done 
with two screws at the back plate of the holder. 



 

Repair of the small shutter

This repair can only be done by an mechanical engineer and only when advised by the Service department




 

Uninterruptable Power Supply

The batteries of the UPS have a life time of at least 3-4 years at 20º C and a few power downs per year (at higher temperatures like 30 ºC it can be half this time). After this time is it advised to switch off the power (on the power rail inside the cabinet at  the backside) and check if the liquid cooler still runs after 1 hour and at least 2 indicating LED's are on. Then switch on the system. If the time becomes too short, the battery should be replaced.
 


User replaceable parts

Monochromator
  1. First switch off the power of the X-ray generator.
  2. The monochromator is fixed with screws from below the collimator stand.
  3. First adjust the Tube 2Theta before mounting.
  4. With the X-ray port: first adjust Tube 2Theta before mounting.
  5. When not mounted in the right position the shutter will not open.
  6. After changing: realign the X-ray optics.
When mounting the collimator, the key must match the slot. When not mounted in the right position the shutter does not open. After changing, check if it is in good alignment with the collimator.

Replaceable parts

Fuses must only be replaced with the power cable disconnected.
 
Goniometer Interface, primary 4 A T, 4 x 20 mm, On the outside of the Interface. 
Goniometer
   24 V 1.6 A T, 4 x 20 mm, F2 on the internal connection board
   Crystal Ill. supply 200 mA T, 4 x 20 mm, F1 on the internal connection board
Detector Controller
   100 - 120 V 3 A T, ¼ x 1¼" (6.3 x 32 mm)
   220 - 240 V 1.5 A T, ¼ x 1¼" (6.3 x 32 mm)
Detector Power unit
   100 - 240 V 10 A T, ¼ x 1¼" (6.3 x 32 mm)
Lamp
O-ring seals
Test crystal
Ammonium bitartrate: part number 0516.353
The crystal is different from a MACH3 system ( smaller size, randomly oriented).
 


Troubleshooting


Start-up and communication problems




 

No acquisition possible / CCD not present

If after grabbing mastership the acquisition image in de Server program, remains grey:



Collision and maximum angle switch

The anti-collision software prevents the goniometer from colliding with the collimator holders or the axis to run past their limits. When a collision takes place because of unexpected circumstances, like a technical error, it is sometimes possible to return:

  1. On the Server computer a menu appears.
  2. Choose the axis and direction to run out of collision.
  3. Press the overrule button at the back of the goniometer. The axis now positions a small step.
  4. If not enough: repeat. As soon as the collision switch is released, the goniometer starts to relocate the zero position.

CCD temperature problem


Leakage of cooling liquid



Error in the image


Generator down (software message)

The X-ray high voltage is off. The generator will show the cause. Possible reasons in the goniometer are:

X-ray intensity problem


Crystal centring with liquid nitrogen

To prevent changing of the crystal centre when using liquid nitrogen:


Problems with liquid cooler or Uninterruptable Power Supply

If the equipment is out of warranty the repair can be carried out by the local representative. The addresses can be found on the web:



Manufacturer and Service

BRUKER AXS B.V., P.O. Box 811, 2600 AV Delft, The Netherlands, Tel: 31 15 2152400 Fax: 31 15 2152500.

Service: see our web site: www.bruker-AXS.com